Spatiocyte A lattice-based particle simulator

Table of contents

Download

git clone https://github.com/ecell/spatiocyte.git

Installation Guide

http://spatiocyte.readthedocs.org/en/latest/install.html

User Guide

http://spatiocyte.readthedocs.org/en/latest/intro.html

References

  • Arjunan, S. N. V., & Tomita, M. (2009). Modeling reaction-diffusion of molecules on surface and in volume spaces with the E-Cell System. International Journal of Computer Science and Information Security, 3(1), 211–216
  • Arjunan, S. N. V., & Tomita, M. (2010). A new multicompartmental reaction-diffusion modeling method links transient membrane attachment of E. coli MinE to E-ring formation. Systems and Synthetic Biology, 4(1), 35–53
  • Arjunan, S. N. V. (2013). A guide to modeling reaction–diffusion of molecules with the E-Cell system, in: E-Cell System, Springer, pp. 43–62